References

R packages

This book was produced all packages (excluding dependencies) listed in table Table 1. As recommended by the ‘tidyverse’ team, all citations to tidyverse packages are collapsed into a single citation.

Table 1: R packages used in this book
Package Version Citation
asreml 4.2.0.302 The VSNi Team (2023)
babeldown 0.0.0.9000 Salmon (2024)
base 4.4.1 R Core Team (2024)
bayesplot 1.11.1 Gabry et al. (2019); Gabry and Mahr (2024)
boot 1.3.31 A. C. Davison and D. V. Hinkley (1997); Angelo Canty and B. D. Ripley (2024)
brio 1.1.5 Hester and Csárdi (2024)
brms 2.21.0 Bürkner (2017); Bürkner (2018); Bürkner (2021)
broom.mixed 0.2.9.5 Bolker and Robinson (2024)
car 3.1.2 Fox and Weisberg (2019a)
coda 0.19.4.1 Plummer et al. (2006)
DHARMa 0.4.6 Hartig (2022)
digest 0.6.37 Eddelbuettel (2024)
effects 4.2.2 Fox (2003); Fox and Hong (2009); Fox and Weisberg (2018); Fox and Weisberg (2019b)
emoji 15.0 Hvitfeldt (2022)
factoextra 1.0.7 Kassambara and Mundt (2020)
FactoMineR 2.11 Lê et al. (2008)
GGally 2.2.1 Schloerke et al. (2024)
ggcleveland 0.1.0 Prunello and Mari (2021)
ggfortify 0.4.17 Tang et al. (2016); Horikoshi and Tang (2018)
ggpubr 0.6.0 Kassambara (2023)
grateful 0.2.10 Rodriguez-Sanchez and Jackson (2023)
gt 0.11.0 Iannone et al. (2024)
hexbin 1.28.4 Carr et al. (2024)
kableExtra 1.4.0 Zhu (2024)
knitr 1.48 Xie (2014); Xie (2015); Xie (2024)
lattice 0.22.6 Sarkar (2008)
lme4 1.1.35.5 Bates et al. (2015)
lmerTest 3.1.3 Kuznetsova et al. (2017)
lmPerm 2.1.0 Wheeler and Torchiano (2016)
lmtest 0.9.40 Zeileis and Hothorn (2002)
MASS 7.3.61 Venables and Ripley (2002)
MCMCglmm 2.36 Hadfield (2010)
memoise 2.0.1 Wickham et al. (2021)
multcomp 1.4.26 Hothorn et al. (2008)
MuMIn 1.48.4 Bartoń (2024)
mvtnorm 1.3.1 Genz and Bretz (2009)
nadiv 2.18.0 Wolak (2012)
palmerpenguins 0.1.1 Horst et al. (2020)
patchwork 1.2.0 Pedersen (2024)
performance 0.12.3 Lüdecke et al. (2021)
pwr 1.3.0 Champely (2020)
quantreg 5.98 Koenker (2024)
reshape2 1.4.4 Wickham (2007)
rmarkdown 2.28 Xie et al. (2018); Xie et al. (2020); Allaire et al. (2024)
rptR 0.9.22 Stoffel et al. (2017)
shiny 1.9.1 Chang et al. (2024)
simpleboot 1.1.8 Peng (2024)
tidyverse 2.0.0 Wickham et al. (2019)
tinkr 0.2.0.9000 Salmon et al. (2024)
vcd 1.4.13 Meyer et al. (2006); Zeileis et al. (2007); Meyer et al. (2024)
vcdExtra 0.8.5 Friendly (2023)
vioplot 0.5.0 Adler et al. (2024)
withr 3.0.1 Hester et al. (2024)
yaml 2.3.10 Garbett et al. (2024)

Bibliography